Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs113107625 chr11:69017872 T/C 2.06E-5 505 21.87 22.7 19.05 KM Plot
LGG rs113113497 chr5:169043512 T/C 1.56E-8 507 21.85 24.6 6.83 KM Plot
LGG rs113165934 chr7:127305431 T/C 5.59E-8 505 21.77 25.77 9.73 KM Plot
LGG rs113174701 chr5:169010867 T/C 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs113184661 chr5:169016765 G/A 1.65E-8 506 21.87 23.85 6.83 KM Plot
LGG rs113197286 chr14:102164679 C/T 5.66E-13 507 21.7 26.6 5.4 KM Plot
LGG rs113199261 chr5:169006266 T/G 1.65E-8 506 22.37 23.85 6.83 KM Plot
LGG rs113313040 chr20:46517441 G/C 1.91E-8 500 21.68 25.83 6.83 KM Plot
LGG rs113357631 chr14:24422946 A/ACT 4.03E-5 509 23.58 21.15 15.53 KM Plot
LGG rs113373979 chr5:169009880 G/C 1.55E-8 507 22.47 23.25 6.83 KM Plot
LGG rs113424535 chr5:169023899 C/T 1.72E-8 505 21.85 23.85 6.83 KM Plot
LGG rs113491972 chr2:2584268 G/A 2.59E-7 494 22.85 20.3 7.6 KM Plot
LGG rs11354026 chr2:202091413 CA/C 2.66E-15 503 23.18 20.23 6.63 KM Plot
LGG rs113632410 chr5:169057073 G/A 1.64E-8 506 21.85 24.07 6.83 KM Plot
LGG rs113649811 chr14:102171544 C/T 6.22E-13 505 21.7 28.72 5.4 KM Plot